Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011910.1 Corchorus capsularis cultivar CVL-1 contig11931, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24232

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
802--863
28
2.2
28
100
0
124
22
22
29
25
1.99
12062--12110
2
25.0
2
80
12
57
44
2
2
51
1.24
12184--12228
18
2.4
18
81
7
54
55
8
0
35
1.31
12332--12374
21
2.0
21
100
0
86
27
23
23
25
2.00
12374--12511
63
2.2
63
97
1
260
23
0
22
52
1.52
17981--18047
31
2.2
31
86
5
93
50
11
14
22
1.76
18177--18282
31
3.5
31
89
2
153
30
16
12
41
1.84
18177--18317
60
2.3
62
82
2
160
29
14
14
41
1.86
19222--19262
3
13.7
3
100
0
82
34
0
0
65
0.93
19331--19440
31
3.6
31
87
2
152
41
11
16
30
1.84
19557--19623
31
2.2
31
86
5
93
20
16
11
50
1.76
20704--20777
32
2.3
30
76
13
76
36
20
6
36
1.79
21744--21813
29
2.4
30
86
9
101
32
22
11
32
1.90
22399--22427
2
14.5
2
100
0
58
48
0
0
51
1.00
22578--22703
66
1.9
66
91
0
207
35
16
14
33
1.89
23362--23848
166
2.9
165
81
4
575
29
15
16
38
1.89
24201--24232
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!