Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011911.1 Corchorus capsularis cultivar CVL-1 contig11932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36406

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
154--192
21
1.9
21
89
5
62
28
5
10
56
1.54
378--408
12
2.6
12
94
0
53
70
0
3
25
1.02
418--498
32
2.5
33
85
4
110
16
34
33
16
1.91
543--573
10
3.0
10
90
9
53
32
0
9
58
1.31
562--654
11
7.1
14
65
22
58
33
2
8
55
1.42
593--660
26
2.6
26
86
9
102
33
1
10
54
1.43
555--660
52
2.1
51
82
8
126
34
1
9
53
1.44
543--654
11
9.0
13
66
26
57
33
1
8
55
1.42
669--728
25
2.5
25
86
5
79
43
0
20
36
1.52
785--871
42
2.1
42
95
0
156
43
5
35
14
1.70
6661--6690
2
15.0
2
100
0
60
50
0
0
50
1.00
15207--15231
2
12.5
2
100
0
50
52
0
0
48
1.00
19046--19078
2
17.5
2
87
12
52
51
0
0
48
1.00
24520--24556
14
2.6
15
87
8
51
40
0
2
56
1.13
24545--24630
25
3.4
23
71
20
66
44
3
1
51
1.26
25196--25235
9
4.4
9
87
9
55
67
10
0
22
1.20
25193--25235
18
2.4
18
84
7
61
65
11
0
23
1.25
28083--28242
80
2.0
80
96
0
293
36
13
20
29
1.91
34249--34309
24
2.5
25
71
12
65
21
21
3
54
1.59
34735--34846
34
3.2
34
78
12
127
26
16
8
48
1.74
34765--34883
37
3.3
36
79
11
136
28
17
6
47
1.73
34735--34885
71
2.1
71
91
0
239
27
17
7
47
1.74

Tables:   1

The End!