Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011912.1 Corchorus capsularis cultivar CVL-1 contig11933, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27422

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2040--2119
27
3.0
27
84
0
88
38
25
21
15
1.92
12834--12868
17
2.0
18
88
5
54
22
8
8
60
1.54
17486--17511
13
2.0
13
100
0
52
30
15
38
15
1.88
21379--21435
26
2.2
26
93
3
98
52
26
3
17
1.60
22166--22207
21
2.0
21
90
0
66
23
11
26
38
1.90
23097--23162
31
2.1
31
91
5
107
27
21
4
46
1.70
23269--23345
38
2.1
35
88
7
109
12
15
12
58
1.64
23686--23768
22
3.8
22
75
9
80
34
10
16
37
1.84
23685--23825
22
6.3
22
71
9
70
31
9
20
37
1.86
23861--23913
22
2.4
22
75
12
54
39
9
16
33
1.81
23925--24132
22
9.3
22
67
18
67
38
9
16
35
1.82
24013--24263
22
11.5
22
72
9
106
43
9
13
33
1.77
24074--24263
44
4.4
44
76
4
136
43
8
12
34
1.74
24095--24242
66
2.2
66
79
2
154
41
9
13
35
1.77
24353--24400
19
2.5
19
93
3
78
45
10
18
25
1.81
24391--24951
22
25.7
22
69
13
221
38
9
14
36
1.80
24735--24820
45
1.9
45
80
4
102
34
10
15
39
1.81
24391--24953
44
12.9
43
69
12
247
38
9
14
36
1.80
24966--25009
22
2.0
22
86
0
61
36
4
15
43
1.68
25858--25898
21
2.0
21
85
9
57
41
4
9
43
1.59
26220--26284
31
2.1
31
88
0
94
41
23
13
21
1.89

Tables:   1

The End!