Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011913.1 Corchorus capsularis cultivar CVL-1 contig11934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28120

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1722--1778
28
2.0
28
100
0
114
24
28
28
19
1.98
2908--2945
11
3.5
11
89
10
51
39
0
2
57
1.12
11876--11937
31
2.0
32
90
3
99
16
9
11
62
1.53
12173--12348
88
2.0
88
96
0
325
28
17
9
44
1.79
14443--14492
24
2.1
24
96
0
91
32
14
28
26
1.94
15417--15548
2
71.0
2
68
19
63
50
0
2
46
1.13
15425--15549
11
11.8
11
71
8
98
52
0
2
45
1.14
15485--15553
13
5.0
13
68
18
50
56
0
1
42
1.08
18461--18495
2
18.0
2
94
5
63
48
0
0
51
1.00
18921--18958
20
1.9
20
88
0
58
42
2
0
55
1.14
18960--19025
24
2.8
24
100
0
132
48
9
0
42
1.35
19458--19484
7
3.9
7
100
0
54
74
0
0
25
0.83
20296--20378
41
2.0
41
95
0
148
28
22
4
43
1.74
21926--21984
24
2.8
20
74
18
64
11
32
20
35
1.89
21939--21989
24
2.1
24
96
0
93
13
29
17
39
1.88

Tables:   1

The End!