Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011917.1 Corchorus capsularis cultivar CVL-1 contig11938, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66837

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--167
86
1.9
85
85
1
224
49
16
15
19
1.80
4728--4812
42
2.0
43
95
2
154
27
20
14
38
1.90
8385--8984
102
5.9
102
80
4
611
28
27
11
33
1.91
29773--29809
2
18.5
2
100
0
74
48
0
0
51
1.00
29908--29942
5
7.0
5
93
0
61
77
2
20
0
0.90
31202--31289
44
2.1
40
85
10
115
23
6
27
42
1.79
32941--32994
27
2.0
27
85
7
74
66
3
7
22
1.33
35790--35817
13
2.2
13
100
0
56
50
21
14
14
1.78
36322--36348
14
1.9
14
100
0
54
51
0
0
48
1.00
36327--36352
12
2.2
12
100
0
52
50
0
0
50
1.00
36494--36533
20
2.0
20
90
0
62
22
20
20
37
1.94
36521--36603
42
2.0
43
88
7
125
34
24
18
22
1.96
37239--37297
3
19.7
3
100
0
118
67
0
32
0
0.91
38491--38541
25
2.0
25
88
0
75
64
5
9
19
1.44
38766--38794
15
1.9
15
100
0
58
93
0
6
0
0.36
50861--51233
184
2.0
185
92
0
613
22
16
17
43
1.88
62946--62975
8
3.8
8
100
0
60
0
13
20
66
1.24

Tables:   1

The End!