Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011919.1 Corchorus capsularis cultivar CVL-1 contig11940, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9019

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1596--2054
227
2.0
228
99
0
902
30
9
24
35
1.88
4976--5022
18
2.6
17
83
12
58
82
2
14
0
0.75
4972--5022
21
2.5
20
78
12
59
80
3
15
0
0.86
6904--7347
37
12.1
38
77
7
423
22
16
16
43
1.87
6912--7327
74
5.6
74
92
2
626
23
16
16
43
1.87
7470--7529
28
2.1
28
84
0
75
38
21
10
30
1.86
7454--7990
148
3.6
148
90
2
828
38
19
8
33
1.81
7621--7675
28
2.0
28
81
0
65
38
18
12
30
1.88
7526--7927
78
5.4
77
67
17
240
39
18
7
34
1.79
7727--7806
35
2.3
35
84
0
97
45
17
5
32
1.70
7767--7825
28
2.1
28
83
0
73
35
23
10
30
1.88
7858--7939
35
2.3
35
81
4
94
37
19
8
34
1.82

Tables:   1

The End!