Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011921.1 Corchorus capsularis cultivar CVL-1 contig11942, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48280

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1123--1185
23
3.0
21
81
9
67
66
7
11
14
1.43
1123--1168
23
2.1
23
88
8
69
65
8
13
13
1.48
2410--2566
82
1.9
80
88
7
237
51
9
10
28
1.67
4267--4454
39
4.9
39
94
2
283
22
20
35
21
1.96
4458--4482
6
4.2
6
100
0
50
16
0
36
48
1.46
6439--6532
23
4.0
23
91
2
143
13
30
21
34
1.92
7334--7427
23
4.0
23
90
2
134
13
31
21
32
1.92
22146--22288
16
9.1
16
82
6
157
9
18
36
36
1.82
22146--22290
31
4.6
32
79
5
161
8
18
35
36
1.82
22204--22304
48
2.1
46
80
8
105
10
21
35
31
1.88
22751--22798
21
2.3
21
85
7
71
54
6
8
31
1.55
22903--22994
16
5.8
16
70
14
73
10
21
34
32
1.88
22943--23023
32
2.5
32
85
0
108
12
20
34
32
1.90
35346--35452
53
2.0
53
94
0
187
43
9
4
42
1.57
36560--36649
45
2.0
45
91
0
144
32
18
23
25
1.97
41674--41700
13
2.1
13
100
0
54
0
0
14
85
0.61
47266--47528
107
2.5
105
87
4
374
40
8
9
41
1.68
48241--48274
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!