Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011923.1 Corchorus capsularis cultivar CVL-1 contig11944, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39119

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6071--6106
19
1.9
19
88
5
56
8
13
5
72
1.27
7207--7236
3
10.0
3
92
0
51
30
0
3
66
1.07
8296--8458
60
2.7
60
81
1
175
38
15
17
28
1.91
8356--8459
31
3.4
29
69
19
79
38
16
18
26
1.92
8498--8665
31
5.5
31
64
18
102
26
19
20
33
1.97
8497--8661
60
2.8
60
88
0
258
26
20
20
33
1.96
18861--18914
3
18.0
3
96
0
99
0
33
1
64
1.04
20366--20475
50
2.2
50
98
0
211
32
24
15
27
1.95
24662--24955
35
7.9
36
71
22
146
21
21
4
53
1.63
24697--24795
22
4.5
22
82
6
121
22
18
6
53
1.66
24691--24775
44
1.9
44
95
0
152
22
18
4
54
1.62
24654--24851
101
2.0
100
93
1
342
22
19
5
53
1.65
24792--24852
22
2.9
21
81
13
63
22
22
3
50
1.63
24813--25202
37
10.8
37
74
16
256
20
21
3
54
1.59
24742--24884
57
2.5
56
86
4
189
23
20
4
51
1.67
24806--24881
28
2.7
30
72
14
79
21
22
2
53
1.57
24817--24981
71
2.4
71
91
5
273
18
24
3
54
1.57
24983--25077
26
3.4
26
83
12
93
25
16
4
53
1.61
25022--25092
32
2.2
32
90
7
108
23
19
4
52
1.64
25119--25235
40
3.1
37
83
13
116
19
19
3
57
1.55
25165--25283
40
2.9
41
83
10
145
21
21
5
51
1.69
29094--29185
27
3.4
27
78
4
87
44
22
14
18
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30516--30563
24
2.0
24
100
0
96
8
25
12
54
1.65
38739--38788
26
1.9
26
95
0
91
28
40
8
24
1.83

Tables:   1

The End!