Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011928.1 Corchorus capsularis cultivar CVL-1 contig11949, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3251
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34


Found at i:3210 original size:2 final size:2

Alignment explanation


    Indices: 3200--3246  Score: 85
    Period size: 2  Copynumber: 23.0  Consensus size: 2

       3190 AACGAAAAAA

                                                                           
       3200 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                 
       3243 AT AT
          1 AT AT

       3247 CTAGC


Statistics
Matches: 44,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   2   42  0.95
   3    2  0.05

ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.