Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011929.1 Corchorus capsularis cultivar CVL-1 contig11950, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33472

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5385--5459
30
2.5
30
86
4
98
37
33
18
10
1.86
6868--6903
18
2.0
18
88
0
54
19
30
19
30
1.96
10188--10231
20
2.1
21
83
4
54
50
13
6
29
1.68
10392--10429
20
1.9
20
94
0
67
55
18
0
26
1.43
11542--11573
9
3.6
9
100
0
64
34
0
9
56
1.32
15870--15902
16
2.1
16
100
0
66
60
18
21
0
1.36
20532--20557
4
6.5
4
100
0
52
23
0
0
76
0.78
22342--22375
11
3.2
10
84
15
50
50
17
2
29
1.61
23905--24094
38
4.8
38
70
19
154
23
8
26
41
1.83
23899--23962
19
3.4
19
74
8
67
21
7
28
42
1.81
23911--23981
20
3.7
19
74
9
72
23
8
29
38
1.85
23828--24095
122
2.2
117
89
5
410
24
8
24
42
1.82
24028--24089
20
3.2
20
77
9
83
22
8
25
43
1.80
33073--33113
20
2.0
21
85
4
57
17
7
12
63
1.50

Tables:   1

The End!