Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011930.1 Corchorus capsularis cultivar CVL-1 contig11951, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84150

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14041--14151
50
2.2
50
86
0
159
38
11
24
25
1.89
16093--16125
16
2.1
16
100
0
66
60
18
21
0
1.36
18264--18395
34
3.8
34
73
9
131
50
6
15
27
1.70
18264--18318
17
3.2
17
71
21
51
52
7
12
27
1.65
18252--18486
71
3.3
71
83
4
294
48
6
18
26
1.73
18388--18454
32
2.1
31
83
10
82
47
5
19
26
1.72
18820--18977
26
6.1
26
72
22
86
54
1
23
20
1.54
18896--18951
15
3.5
16
69
16
53
58
0
19
21
1.39
18889--19023
28
4.7
28
71
21
100
57
2
22
18
1.52
19621--19699
33
2.5
31
79
15
92
37
2
2
56
1.26
22971--23035
30
2.2
30
94
0
112
41
9
30
18
1.82
28264--28323
30
2.0
30
93
0
102
35
21
25
18
1.96
29451--29535
43
1.9
45
88
4
129
28
14
2
55
1.51
30052--30099
11
4.5
11
73
5
53
37
10
6
45
1.64
34299--34344
2
23.5
2
86
4
67
52
2
0
45
1.13
35292--35364
31
2.4
30
84
6
94
15
19
24
41
1.89
38225--38254
14
2.1
14
93
0
51
33
3
0
63
1.11
45631--45692
31
2.0
31
100
0
124
32
9
6
51
1.60
47362--47411
17
3.0
16
85
8
64
34
22
22
22
1.97
51622--51660
21
1.9
20
84
5
51
43
12
7
35
1.72
55165--55268
39
2.7
38
85
8
129
16
9
30
43
1.80
57382--57419
20
1.9
20
100
0
76
18
31
15
34
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58977--59105
35
3.7
35
82
0
114
28
13
31
26
1.93
62891--63033
39
3.7
39
88
1
207
18
10
30
40
1.84
67061--67101
21
2.0
21
90
0
64
46
19
14
19
1.84
70033--70080
20
2.3
21
89
3
71
66
6
8
18
1.39
82033--82071
21
1.9
19
85
10
51
43
20
10
25
1.83
83831--83878
13
3.6
13
73
15
53
12
25
0
62
1.30
83834--83906
27
2.6
28
83
10
80
15
23
0
61
1.33
84003--84150
35
3.9
36
80
14
174
20
21
6
50
1.71
84074--84149
22
3.5
22
83
7
109
22
21
5
51
1.67
84080--84143
15
4.3
15
70
18
53
20
21
3
54
1.58

Tables:   1

The End!