Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011931.1 Corchorus capsularis cultivar CVL-1 contig11952, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7443

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
256--311
16
3.4
16
68
18
51
50
10
19
19
1.77
254--323
34
2.1
34
94
2
124
55
11
15
17
1.68
434--499
26
2.5
27
83
13
84
45
19
15
19
1.85
434--503
27
2.7
25
85
12
88
42
22
15
18
1.88
749--987
45
5.3
45
93
1
374
31
17
22
28
1.97
3054--3086
10
3.7
9
88
11
50
0
9
0
90
0.44
4842--4951
42
2.7
38
79
12
96
40
12
21
25
1.89
6391--6448
16
3.5
16
79
9
62
24
18
1
55
1.52
6391--6445
18
3.2
17
76
16
51
23
18
1
56
1.51
6470--6517
13
3.6
13
73
15
53
12
25
0
62
1.30
6473--6545
27
2.6
28
83
10
80
15
23
0
61
1.33
6590--6865
21
12.6
22
73
14
180
21
20
5
52
1.67
6642--6789
36
3.9
36
82
10
172
22
20
6
51
1.69
6713--6865
44
3.6
44
78
12
176
20
20
5
52
1.66
6828--6939
35
3.2
33
84
10
127
18
23
2
55
1.55
7055--7089
16
2.1
17
89
5
54
14
22
5
57
1.59
7080--7186
40
2.6
39
84
10
126
24
20
5
49
1.70

Tables:   1

The End!