Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011940.1 Corchorus capsularis cultivar CVL-1 contig11961, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7021

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
529--588
27
2.2
27
87
0
84
46
20
15
18
1.84
1376--1433
14
4.3
13
77
12
55
43
6
12
37
1.69
2083--2125
10
4.1
10
93
6
68
86
0
13
0
0.58
2079--2125
17
2.6
18
80
12
60
85
0
14
0
0.61
3829--4143
54
5.8
54
88
1
445
30
15
20
33
1.93
3829--4188
108
3.3
105
86
5
395
29
15
21
33
1.94
4165--4254
42
2.2
40
84
7
110
27
14
25
32
1.95
4228--4550
35
9.0
35
82
6
360
30
16
23
30
1.96
4262--4480
113
1.9
113
92
0
366
28
15
24
31
1.96
4186--4510
148
2.2
148
85
3
424
29
15
24
30
1.96
4228--4571
183
1.9
184
89
1
539
29
16
24
29
1.96
4974--5272
63
4.9
62
83
7
353
39
16
21
23
1.92
4996--5272
120
2.3
120
84
7
344
38
16
21
23
1.93
5497--5705
70
3.0
69
89
0
310
36
22
20
21
1.95
5584--5852
119
2.3
119
89
2
423
37
22
20
20
1.95
5813--5947
35
3.9
35
84
0
162
39
21
20
18
1.93
5827--5982
70
2.3
64
81
8
170
39
21
19
20
1.93
5814--5982
35
5.0
34
77
13
136
39
20
19
20
1.93
5886--5978
29
2.9
30
82
10
98
39
18
17
24
1.91

Tables:   1

The End!