Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011942.1 Corchorus capsularis cultivar CVL-1 contig11963, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18517

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4902--4962
32
1.9
32
86
0
86
49
6
21
22
1.72
4851--5057
104
2.0
103
80
6
229
52
4
20
23
1.64
5091--5152
32
1.9
32
93
0
106
50
3
27
19
1.63
5127--5248
40
3.2
40
85
8
150
53
1
21
23
1.55
5192--5241
12
4.4
12
75
14
61
56
0
16
28
1.41
5270--5360
32
2.9
33
85
9
111
56
4
16
23
1.58
5333--5395
26
2.4
27
81
2
83
53
3
12
30
1.54
5397--5544
7
20.7
7
73
15
117
57
2
25
15
1.49
5401--5544
29
5.0
28
75
13
100
57
2
25
15
1.49
5400--5509
22
5.0
22
82
10
129
58
1
25
14
1.47
5400--5516
43
2.7
43
84
9
132
57
2
24
15
1.51
5576--5638
15
3.7
15
72
25
54
53
6
15
23
1.65
5575--5659
22
4.2
22
69
22
69
52
5
17
23
1.66
5640--5676
14
2.6
14
86
4
56
56
5
16
21
1.59
5618--5805
22
9.0
22
75
17
179
55
5
18
20
1.62
5688--5919
43
5.6
42
78
13
196
52
6
20
21
1.67
5731--5884
78
2.0
79
87
6
224
53
5
18
22
1.66
5575--5674
37
2.7
36
92
1
137
53
6
18
23
1.66
5767--5853
35
2.5
35
88
1
102
54
5
20
19
1.65
5800--5921
29
4.2
29
69
13
90
51
5
21
21
1.68
7865--7913
21
2.3
21
92
0
80
20
18
18
42
1.89
10353--10412
30
2.0
30
96
0
111
41
8
20
30
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11725--12086
179
2.0
178
92
3
600
35
14
6
43
1.72
13085--13993
199
4.6
198
84
4
1112
34
17
13
34
1.89
13820--14168
175
2.0
175
89
0
527
34
17
13
34
1.89
16272--16320
12
4.2
12
74
10
57
30
0
0
69
0.89
16278--16330
19
2.8
19
74
5
54
35
0
0
64
0.94

Tables:   1

The End!