Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011946.1 Corchorus capsularis cultivar CVL-1 contig11967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65618

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12185--12216
11
2.9
11
100
0
64
18
0
0
81
0.70
13312--13341
5
6.2
5
92
7
53
83
0
0
16
0.65
15711--15794
33
2.5
33
86
3
116
21
36
28
13
1.91
15711--15818
33
3.3
32
81
5
99
21
40
26
11
1.86
15793--15855
33
1.9
33
83
6
83
22
41
25
11
1.86
16320--16358
18
2.1
18
85
4
51
43
2
20
33
1.65
16772--16805
8
4.1
8
85
7
50
58
14
2
23
1.50
16884--16914
10
3.2
10
90
9
55
87
0
0
12
0.55
16887--16912
9
2.9
9
100
0
52
92
0
0
7
0.39
22269--22375
33
3.2
33
82
5
119
22
40
28
8
1.83
31009--31130
57
2.1
57
93
0
208
13
34
26
25
1.93
33048--33097
14
3.7
14
80
15
52
6
14
0
80
0.90
33054--33099
7
6.6
7
82
7
58
4
13
0
82
0.81
33300--33672
70
5.4
69
86
2
450
30
18
26
25
1.98
33635--33711
39
2.0
38
87
2
109
35
16
22
25
1.95
34325--34381
15
3.9
14
84
11
69
1
14
0
84
0.71
34329--34367
20
2.0
20
100
0
78
0
12
0
87
0.55
34311--34379
31
2.2
32
80
15
81
2
17
0
79
0.85
34332--34379
20
2.4
20
89
6
71
2
14
0
83
0.74
34327--34383
12
4.9
11
83
14
53
3
14
0
82
0.80
34689--34742
24
2.2
26
86
6
76
16
22
0
61
1.35
35100--35184
45
1.9
44
92
7
145
37
16
9
36
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35194--35234
16
2.4
18
80
15
52
0
21
0
78
0.76
35195--35233
17
2.3
17
86
8
53
0
17
0
82
0.68
41699--41724
10
2.6
10
100
0
52
0
7
0
92
0.39
47076--47377
122
2.4
124
81
6
364
31
29
25
13
1.94
54651--54713
32
1.9
33
87
3
92
47
3
12
36
1.58
61455--61576
59
2.1
59
100
0
244
39
23
8
28
1.83

Tables:   1

The End!