Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011947.1 Corchorus capsularis cultivar CVL-1 contig11968, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55968

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3517--3553
19
2.0
18
89
5
56
32
21
5
40
1.76
11244--11289
14
3.3
14
77
22
60
47
4
21
26
1.69
11344--11385
14
2.8
15
82
10
50
38
2
23
35
1.68
11405--11470
22
3.0
22
90
0
96
48
4
18
28
1.67
11415--12091
36
17.8
36
69
17
213
43
4
23
28
1.74
11483--11516
14
2.4
14
95
0
59
44
0
23
32
1.54
11498--11574
22
3.6
22
84
6
88
42
5
24
27
1.75
11483--12090
8
81.6
8
65
19
168
42
4
24
28
1.74
11625--12090
22
20.6
24
69
19
99
42
3
24
29
1.71
11697--11744
14
3.5
13
83
8
60
41
8
22
27
1.82
11711--12045
22
15.2
22
72
15
141
42
3
23
29
1.71
11726--12095
14
25.3
14
67
21
149
42
3
23
30
1.70
12287--12624
70
4.8
70
91
3
529
29
17
27
25
1.97
12283--12624
140
2.4
141
93
1
582
28
17
27
26
1.97
13147--13242
50
1.9
50
89
0
147
40
12
12
34
1.81
14276--14386
43
2.5
44
86
4
152
37
16
8
37
1.78
14412--14453
21
1.9
21
85
9
57
2
19
4
73
1.12
15128--15154
3
9.0
3
100
0
54
33
0
0
66
0.92
22388--22431
22
2.0
23
86
4
63
2
25
0
72
0.96
22378--22431
28
1.9
28
85
7
74
1
22
1
74
1.02
22397--22446
22
2.3
22
82
6
57
4
24
2
70
1.15
25746--25773
6
4.7
6
100
0
56
0
17
0
82
0.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31442--31485
21
2.0
21
86
8
61
40
15
25
18
1.90
32430--32489
21
2.9
21
76
0
75
31
21
11
35
1.90
34311--34346
10
3.6
10
92
7
56
80
2
0
16
0.83
34918--34953
17
2.1
17
100
0
72
50
11
22
16
1.77
48121--48180
24
2.5
24
97
0
111
23
30
28
18
1.98
53169--53198
13
2.3
13
100
0
60
13
36
16
33
1.88
55589--55622
14
2.4
14
85
0
50
20
0
8
70
1.13

Tables:   1

The End!