genome.fa.s11948.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011948.1 Corchorus capsularis cultivar CVL-1 contig11969, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131968

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2278--2417	33	4.2	33	81	5	158	11	30	37	20	1.88
3722--3747	11	2.4	11	100	0	52	42	7	0	50	1.31
3904--3938	13	2.8	13	95	4	63	77	0	0	22	0.78
7550--7599	21	2.4	21	90	6	75	4	32	2	62	1.25
14440--14490	26	1.9	27	92	4	86	31	39	11	17	1.86
14440--14497	26	2.1	27	84	6	73	36	37	10	15	1.82
14802--14950	76	2.0	76	85	2	201	28	26	6	38	1.82
18490--18525	19	1.9	18	88	5	54	41	0	22	36	1.54
25505--25557	11	5.2	10	78	17	56	39	0	18	41	1.51
25516--25551	19	1.9	18	88	5	54	41	0	22	36	1.54
27912--27955	22	2.0	22	86	0	61	29	25	18	27	1.98
27905--28004	52	1.9	52	95	0	182	29	24	24	23	1.99
27963--28006	22	2.0	22	86	0	61	29	25	22	22	1.99
33042--33135	30	3.4	28	70	17	79	10	27	32	28	1.90
37840--37871	11	2.9	11	90	0	55	43	18	6	31	1.75
43430--43468	21	1.9	20	84	5	51	66	7	2	23	1.30
51381--51797	37	10.9	36	84	9	209	46	10	17	24	1.80
51381--51576	41	4.9	41	90	3	258	45	12	17	24	1.82
51549--51977	37	11.5	37	89	1	624	47	9	17	25	1.78
51562--51977	112	3.7	112	93	0	654	48	9	17	25	1.76
51980--52246	41	6.5	41	94	0	444	48	12	19	19	1.80
51562--52013	187	2.4	186	85	5	524	49	9	16	24	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52021--52087	23	3.1	22	63	20	52	47	13	17	20	1.81
52103--52211	23	5.2	22	60	20	54	48	12	19	19	1.80
52253--52386	36	3.7	36	87	5	184	50	13	11	24	1.75
52381--52513	70	1.9	69	90	1	212	39	10	26	24	1.87
52381--52496	33	3.4	32	81	14	126	37	12	25	25	1.90
52391--52566	37	4.9	37	81	5	180	39	9	25	26	1.85
52381--52534	70	2.2	70	85	1	202	38	10	25	25	1.88
52550--52611	32	1.9	32	90	0	97	30	11	29	29	1.91
52590--52777	36	5.2	36	84	7	238	43	9	19	28	1.82
52590--52777	73	2.6	72	87	3	279	43	9	19	28	1.82
52586--52816	109	2.1	110	81	9	276	43	9	20	26	1.82
56239--56280	17	2.5	17	80	7	50	16	9	16	57	1.65
59583--59642	31	1.9	31	96	0	111	38	1	36	23	1.65
63137--63190	25	2.2	25	89	0	81	29	7	27	35	1.84
64263--64348	13	6.0	15	67	24	60	30	5	29	34	1.81
64259--64312	25	2.2	25	96	0	99	27	5	29	37	1.80
69581--69707	66	1.9	66	91	3	211	25	20	10	43	1.83
75777--75810	17	1.9	18	88	5	52	76	2	20	0	0.92
84786--84843	30	1.9	30	89	0	89	37	8	27	25	1.85
87117--87195	28	2.7	29	82	7	88	30	18	11	39	1.86
87327--87414	29	3.1	29	96	3	162	39	13	15	30	1.87
88363--88429	31	2.2	31	94	0	116	25	13	11	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88598--88664	30	2.2	31	91	2	109	44	13	17	23	1.85
90554--90602	16	3.1	15	77	8	53	48	26	14	10	1.75
90842--90929	30	2.8	30	73	11	79	46	2	3	47	1.31
90930--90978	21	2.3	22	85	7	73	55	0	0	44	0.99
90978--91024	22	2.1	22	84	7	60	55	14	8	21	1.66
91438--91493	16	3.4	16	71	11	51	39	32	7	21	1.80
91386--91493	32	3.4	32	74	6	94	41	29	8	20	1.81
94716--94820	32	3.3	32	82	5	131	16	10	37	36	1.83
95030--95103	15	4.7	16	69	15	55	8	8	28	55	1.58
95017--95103	32	2.8	32	82	1	122	8	9	29	52	1.62
95030--95088	16	3.7	15	80	8	64	8	8	27	55	1.58
95017--95104	16	5.6	15	71	9	59	7	10	29	52	1.64
95237--95268	10	3.2	10	90	0	55	21	21	18	37	1.94
95626--95683	18	3.1	18	70	18	55	18	3	31	46	1.66
96718--96758	21	2.0	21	95	4	75	41	24	9	24	1.85
117429--117533	33	3.2	33	79	5	104	24	8	21	44	1.80
120212--120252	21	2.0	21	85	0	55	43	19	9	26	1.82
126277--127340	437	2.4	437	81	4	1160	31	13	12	43	1.80
130877--130941	32	2.0	32	100	0	130	44	3	18	33	1.65
131492--131521	13	2.4	12	94	5	51	36	13	0	50	1.42
131492--131521	6	4.8	6	92	8	51	36	13	0	50	1.42

Tables:   1

The End!