Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011950.1 Corchorus capsularis cultivar CVL-1 contig11971, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2992
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:1622 original size:20 final size:20

Alignment explanation


    Indices: 1586--1624  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1576 AAATACAAGG

                        *       
       1586 CATTTGATTTACGAATTGGA
          1 CATTTGATTTACAAATTGGA

                      *        
       1606 CATTTGATTTGCAAATTGG
          1 CATTTGATTTACAAATTGG

       1625 TGCCCTTTTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41


Consensus pattern (20 bp):   
CATTTGATTTACAAATTGGA
Done.