Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011952.1 Corchorus capsularis cultivar CVL-1 contig11973, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6718

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
817--1193
188
2.0
188
100
0
754
18
23
11
46
1.81
1459--1539
27
3.0
27
87
1
108
17
18
23
40
1.91
2207--2240
16
2.1
16
88
0
50
58
11
20
8
1.59
4273--4721
51
8.8
50
74
5
373
42
4
16
36
1.68
4273--4721
101
4.4
101
88
4
616
42
4
16
36
1.68
4266--4721
205
2.2
202
86
5
630
42
4
16
36
1.68
4273--4771
51
9.8
51
74
9
270
42
4
16
36
1.69
5441--5602
47
3.4
47
91
0
252
46
8
21
22
1.78
5563--5721
74
2.2
71
78
7
169
49
8
16
25
1.74
5815--5964
35
4.2
36
73
12
112
56
5
20
18
1.61
5836--5969
72
1.9
71
81
7
164
57
5
19
17
1.60
6072--6159
21
4.1
21
75
7
79
48
7
22
20
1.75
6140--6195
15
3.9
15
74
9
62
57
5
21
16
1.59
6191--6295
43
2.5
41
81
7
122
54
7
16
21
1.67
6176--6273
21
4.5
22
75
21
82
54
8
17
20
1.68
6171--6295
21
5.8
20
72
17
76
55
7
16
21
1.65

Tables:   1

The End!