genome.fa.s11955.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011955.1 Corchorus capsularis cultivar CVL-1 contig11976, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38373

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--62	21	2.9	21	82	4	70	60	9	16	13	1.58
92--144	22	2.4	22	90	6	81	60	3	15	20	1.50
118--165	14	3.4	14	88	5	78	56	6	14	22	1.61
16--165	77	2.0	76	81	9	180	56	7	17	18	1.63
140--213	21	3.5	20	73	12	51	50	9	20	20	1.76
292--356	27	2.3	28	73	10	69	61	0	23	15	1.33
2410--2462	21	2.6	21	87	3	72	9	30	32	28	1.88
11899--11990	6	13.3	6	72	24	51	47	5	18	28	1.70
11900--11996	14	6.4	14	67	25	54	46	6	18	28	1.73
11929--11993	22	3.0	22	86	4	87	47	6	20	26	1.73
12000--12041	14	2.8	15	82	10	50	38	2	23	35	1.68
12103--12136	14	2.4	14	90	0	50	41	0	26	32	1.56
12146--12204	29	2.0	29	86	0	82	47	5	20	27	1.71
12212--12258	24	2.0	24	91	0	76	42	2	25	29	1.67
12103--12260	8	21.0	8	66	15	61	42	3	25	28	1.72
12318--12416	22	4.5	22	81	5	92	41	6	21	31	1.77
12512--12601	8	11.2	8	72	11	69	46	3	23	26	1.68
12513--12600	24	3.7	24	78	3	97	46	3	22	27	1.68
12508--12600	48	1.9	49	84	6	127	46	3	23	26	1.68
13589--13619	15	2.0	16	93	6	55	12	9	0	77	0.99
16299--16345	23	2.0	24	83	8	60	57	19	2	21	1.51
20405--20442	19	2.0	20	84	5	51	39	2	5	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22516--22548	6	5.7	6	89	7	50	15	0	12	72	1.12
22892--22929	13	2.9	13	85	14	60	42	5	7	44	1.56
22904--22968	33	2.0	33	96	0	121	36	12	9	41	1.75
30130--30167	18	2.1	18	100	0	76	21	26	36	15	1.93
31868--31971	41	2.5	41	93	0	172	39	12	22	25	1.89
31980--32572	37	16.0	36	79	12	483	46	10	18	24	1.80
31963--32575	223	2.8	220	78	11	658	47	9	18	24	1.79
32428--32516	30	2.7	33	89	10	130	47	12	15	24	1.80
32366--32553	103	1.8	104	84	10	260	46	10	17	25	1.80
32541--32868	94	3.3	94	68	21	277	46	8	21	24	1.78
32593--32737	76	1.9	77	87	7	215	45	8	21	24	1.79
32690--32783	37	2.6	37	86	8	138	46	7	20	25	1.76
32805--33154	36	9.1	41	72	13	332	46	10	19	23	1.81
32491--33173	208	3.2	206	84	10	788	46	9	20	23	1.79
32805--33193	77	5.1	77	91	1	608	46	10	19	24	1.81
33272--33389	37	3.2	37	85	0	146	42	7	26	23	1.81
33272--33407	37	3.7	37	83	5	116	41	8	25	24	1.84
33398--33507	37	3.1	35	88	7	166	37	10	23	29	1.87
33398--33506	36	3.0	36	89	6	166	37	10	22	29	1.87
33464--33626	73	2.2	73	93	0	281	47	9	17	25	1.78
36718--36774	29	2.0	29	83	10	73	35	12	14	38	1.83
36747--36850	48	2.2	46	87	3	154	37	9	14	38	1.79

Tables:   1

The End!