Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011956.1 Corchorus capsularis cultivar CVL-1 contig11977, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64803

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
195--312
40
3.0
40
97
1
220
12
27
22
36
1.91
3647--3685
20
1.9
21
94
5
71
69
5
5
20
1.28
7711--7817
33
3.2
33
81
2
117
8
26
40
25
1.84
26670--26708
2
19.5
2
89
0
60
46
0
5
48
1.24
26670--26708
18
2.2
18
100
0
78
46
0
5
48
1.24
28845--28888
15
3.1
15
78
15
58
43
9
0
47
1.35
31728--31824
2
52.0
2
69
24
52
44
2
3
50
1.29
31715--31821
23
4.5
23
67
23
62
43
1
3
50
1.30
32905--32929
2
12.5
2
100
0
50
48
0
0
52
1.00
38371--38448
24
3.2
24
90
0
120
14
33
30
21
1.93
38509--38606
32
3.1
32
89
0
151
19
19
25
35
1.95
41005--41094
27
3.3
27
95
0
153
20
17
42
20
1.90
41826--41903
33
2.3
34
95
4
140
57
17
17
6
1.60
42379--42416
19
2.0
20
85
10
53
36
18
18
26
1.94
42882--42906
10
2.5
10
100
0
50
24
8
20
48
1.76
45138--45189
10
4.8
10
80
15
59
11
26
48
13
1.77
52170--52266
30
3.1
30
77
11
106
25
39
24
10
1.87
52184--52266
33
2.6
32
79
9
98
27
40
21
9
1.84
58786--58890
33
3.2
32
77
5
111
25
8
19
46
1.78
58916--59023
33
3.3
33
92
1
173
26
10
17
45
1.80
59368--61333
984
2.0
982
93
1
3363
28
15
22
33
1.95
63273--63350
32
2.5
32
80
10
90
24
32
30
12
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63271--63370
30
3.3
30
74
13
96
25
36
28
11
1.90

Tables:   1

The End!