Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011963.1 Corchorus capsularis cultivar CVL-1 contig11984, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 39438
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33


Found at i:16434 original size:18 final size:18

Alignment explanation


    Indices: 16395--16440  Score: 58
    Period size: 18  Copynumber: 2.6  Consensus size: 18

      16385 AAAATGCCGT

                              
      16395 TAATGTTTATTCTGAATG
          1 TAATGTTTATTCTGAATG

                *         *   
      16413 TAATTTTTATTCT-CATG
          1 TAATGTTTATTCTGAATG

                       
      16430 CTAATGTTTAT
          1 -TAATGTTTAT

      16441 ATCCAATGGC


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  17    3  0.12
  18   21  0.88

ACGTcount: A:0.26, C:0.09, G:0.11, T:0.54


Consensus pattern (18 bp):   
TAATGTTTATTCTGAATG

Found at i:39418 original size:2 final size:2

Alignment explanation


    Indices: 39411--39438  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

      39401 CAACAAACTT

                                                     
      39411 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
GA

Done.