Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011966.1 Corchorus capsularis cultivar CVL-1 contig11987, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50809

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1890--1923
16
2.1
16
94
0
59
26
0
14
58
1.36
1994--2045
25
2.1
25
85
0
68
46
0
1
51
1.12
5564--5589
3
8.7
3
100
0
52
30
0
0
69
0.89
6064--6088
2
12.5
2
100
0
50
52
0
0
48
1.00
15661--15717
26
2.2
25
87
9
80
43
15
5
35
1.70
17188--17247
30
2.0
30
90
0
93
41
18
3
36
1.67
19045--19069
6
4.2
6
100
0
50
36
32
32
0
1.58
27632--27675
21
2.1
21
87
8
63
22
29
11
36
1.89
27674--27717
14
2.9
15
83
13
54
15
29
2
52
1.55
27745--27825
33
2.5
32
88
6
117
12
40
38
8
1.74
27845--27934
34
2.7
33
87
3
128
14
30
38
16
1.89
29106--29169
22
2.8
23
72
6
60
48
15
15
20
1.81
32490--32548
28
2.0
30
93
6
104
40
10
10
38
1.73
32637--32850
104
2.1
104
97
0
401
36
18
17
27
1.93
33076--33104
3
9.7
3
100
0
58
65
0
0
34
0.93
33103--33131
3
9.7
3
100
0
58
34
0
0
65
0.93
33653--33886
125
1.9
122
95
2
423
44
13
5
37
1.66
34025--34052
2
14.0
2
100
0
56
50
0
0
50
1.00
34132--34218
43
2.0
43
97
0
165
32
21
11
34
1.89
34315--34350
10
3.6
10
92
0
63
38
19
8
33
1.82
35455--35484
12
2.5
12
94
0
51
30
23
13
33
1.93
37592--37632
6
6.8
6
97
0
64
21
17
60
0
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39101--39157
23
2.4
24
80
8
64
31
8
0
59
1.28
39140--39189
21
2.5
21
83
6
59
44
0
0
56
0.99
39156--39189
18
1.9
17
88
5
50
50
0
0
50
1.00
40526--40570
22
2.2
20
84
11
56
40
22
17
20
1.92
40543--40663
31
4.0
30
83
3
111
33
27
23
15
1.95
40491--40592
53
1.9
53
85
0
141
36
25
19
18
1.95
40542--40642
31
3.3
31
88
1
141
31
27
24
15
1.96
40910--40954
4
11.2
4
100
0
90
51
24
0
24
1.49
41996--42108
14
8.1
14
67
13
63
44
5
7
42
1.56
41985--42109
41
3.0
41
98
1
241
41
4
7
46
1.52
43026--43099
2
38.0
2
71
15
57
44
4
5
45
1.45
43525--43552
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!