Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011969.1 Corchorus capsularis cultivar CVL-1 contig11990, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24490

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20--65
20
2.2
21
88
3
67
28
6
15
50
1.69
7942--7975
14
2.4
14
90
0
50
35
23
14
26
1.94
10121--10162
6
7.0
6
100
0
84
33
16
0
50
1.46
13474--13508
7
5.0
7
100
0
70
14
28
0
57
1.38
14761--14790
7
4.3
7
100
0
60
56
0
13
30
1.37
14903--14929
6
4.5
6
100
0
54
33
0
29
37
1.58
15222--15255
2
17.0
2
100
0
68
50
0
0
50
1.00
20087--20152
35
1.9
34
90
6
107
36
15
24
24
1.93
20984--21008
2
12.5
2
100
0
50
48
0
0
52
1.00
21778--21807
1
30.0
1
100
0
60
100
0
0
0
0.00
22957--23001
22
2.1
22
83
4
56
20
28
8
42
1.82
23420--23516
33
2.9
33
80
11
119
13
43
31
11
1.79
23556--23644
33
2.7
33
89
1
126
12
30
41
15
1.84

Tables:   1

The End!