Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011975.1 Corchorus capsularis cultivar CVL-1 contig11996, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41568

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--752
335
2.2
332
79
7
783
36
15
14
34
1.88
3900--4036
60
2.3
60
85
0
184
29
17
16
36
1.92
3900--4057
60
2.6
60
80
4
183
29
17
15
37
1.91
5316--5347
2
16.0
2
100
0
64
50
0
0
50
1.00
5670--5703
3
11.3
3
87
0
50
73
0
26
0
0.83
5803--5854
15
3.5
15
94
0
86
28
26
38
5
1.79
6038--6075
18
2.1
18
95
0
67
52
0
47
0
1.00
6140--6182
18
2.4
19
84
11
63
51
0
4
44
1.22
6148--6181
6
5.8
6
96
3
61
52
0
0
47
1.00
10936--11062
63
2.0
63
96
0
236
37
14
8
39
1.77
12536--12576
11
3.7
11
86
0
64
48
2
0
48
1.14
13427--13516
33
2.7
33
94
0
162
21
35
31
12
1.90
13950--13983
2
18.0
2
88
11
54
50
0
0
50
1.00
14596--14625
15
2.0
15
100
0
60
60
20
0
20
1.37
20983--21012
15
2.0
15
100
0
60
53
6
20
20
1.67
24519--24544
6
4.3
6
100
0
52
19
46
19
15
1.85
25813--25884
15
5.1
14
69
24
53
55
1
40
2
1.23
25815--25896
28
3.0
28
75
18
82
56
1
40
2
1.20
31170--31213
18
2.4
18
88
0
61
15
4
47
31
1.66
35905--35946
16
2.7
16
79
17
52
40
0
0
59
0.97
38311--38340
6
5.0
6
91
0
51
36
33
13
16
1.88

Tables:   1

The End!