Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011980.1 Corchorus capsularis cultivar CVL-1 contig12001, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82535

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
339--419
29
2.7
29
80
14
85
24
23
18
33
1.97
5383--5410
2
14.0
2
100
0
56
50
0
0
50
1.00
9177--9208
3
11.0
3
93
6
57
0
31
0
68
0.90
11135--11161
1
27.0
1
100
0
54
0
0
0
100
0.00
17387--17436
8
6.0
8
84
9
55
16
0
0
84
0.63
28324--28370
23
2.0
23
100
0
94
57
12
21
8
1.62
39122--39153
2
16.0
2
100
0
64
50
0
0
50
1.00
60069--60097
14
2.1
14
100
0
58
20
6
20
51
1.70
62988--63025
2
19.5
2
89
5
60
47
0
2
50
1.15
65662--65839
75
2.3
78
87
4
254
21
14
17
47
1.82
78682--78788
53
2.0
53
92
0
178
42
6
9
42
1.63
80033--80059
13
2.1
13
100
0
54
14
7
22
55
1.64
81283--81347
31
2.2
30
91
5
105
49
12
18
20
1.79
81468--81577
31
3.6
31
83
7
136
29
15
12
42
1.84
81638--81696
3
19.7
3
100
0
118
66
0
0
33
0.92
81916--81949
14
2.5
14
90
4
52
38
0
5
55
1.24
82250--82306
26
2.2
27
78
9
64
61
3
5
29
1.35

Tables:   1

The End!