Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011981.1 Corchorus capsularis cultivar CVL-1 contig12002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53249

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68--134
31
2.2
31
89
5
102
23
17
10
47
1.79
5371--5418
7
6.9
7
87
0
60
22
14
29
33
1.94
27064--27090
2
13.5
2
100
0
54
51
0
0
48
1.00
29201--29230
2
15.0
2
92
0
51
46
0
3
50
1.18
29618--29643
8
3.2
8
100
0
52
26
11
11
50
1.73
32233--32389
73
2.1
74
89
2
235
43
9
25
21
1.82
33142--33255
33
3.4
32
80
12
90
14
32
33
19
1.92
33242--33304
33
1.9
33
87
6
92
14
39
33
12
1.84
43621--43778
78
2.0
79
98
1
309
37
13
16
32
1.88
45248--45288
12
3.3
13
83
10
59
53
7
0
39
1.29
46655--46699
7
6.1
7
82
17
56
40
0
13
46
1.43
46655--46699
15
3.1
15
81
18
67
40
0
13
46
1.43
46676--46933
142
1.8
142
97
0
491
32
5
24
38
1.77
50419--50548
43
3.0
42
91
4
206
32
4
30
33
1.78
51256--51298
13
3.2
13
75
18
52
25
4
6
62
1.40
51848--51889
1
42.0
1
85
0
57
7
0
0
92
0.37
51848--51889
15
2.9
15
92
3
68
7
0
0
92
0.37
51848--51891
22
2.0
22
91
4
72
9
0
0
90
0.44
53004--53047
21
2.1
21
91
0
70
22
31
11
34
1.90
53093--53180
33
2.7
33
87
7
133
17
40
31
10
1.82

Tables:   1

The End!