Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011988.1 Corchorus capsularis cultivar CVL-1 contig12009, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60315

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--56
2
25.5
2
100
0
102
0
49
0
50
1.00
17455--17527
36
2.0
36
97
0
137
47
23
15
13
1.80
25964--25989
2
13.0
2
100
0
52
50
0
0
50
1.00
27478--27536
21
2.8
21
82
7
66
42
18
8
30
1.80
31752--31781
2
15.0
2
100
0
60
50
0
0
50
1.00
40841--40874
2
17.0
2
100
0
68
50
0
0
50
1.00
58725--58782
3
18.0
3
89
7
71
60
0
1
37
1.07
59210--59244
18
1.9
18
94
0
61
20
37
17
25
1.94

Tables:   1

The End!