Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011990.1 Corchorus capsularis cultivar CVL-1 contig12011, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42560

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
309--342
2
17.0
2
100
0
68
50
0
0
50
1.00
5156--5205
25
2.0
25
84
7
66
16
20
6
58
1.59
17420--17469
21
2.2
24
76
20
63
58
0
34
8
1.28
19980--20201
109
2.0
112
95
2
405
36
9
1
53
1.41
20051--20126
39
1.9
39
89
5
118
32
11
1
53
1.45
20106--20251
73
2.0
74
86
6
206
36
12
0
50
1.45
20641--20678
18
2.1
18
100
0
76
26
15
10
47
1.78
22561--22696
69
2.0
69
92
0
227
27
24
31
16
1.96
25084--25127
21
2.1
21
82
0
52
18
27
25
29
1.98
27998--28025
2
14.0
2
100
0
56
50
0
0
50
1.00
31141--31185
1
45.0
1
100
0
90
0
0
0
100
0.00
37075--38206
26
43.5
27
81
9
1157
27
15
24
33
1.95
37017--38420
52
27.2
52
79
11
1303
27
15
23
33
1.95
37018--38411
78
18.0
77
80
10
1349
27
15
23
33
1.95
37787--37827
20
2.0
20
95
0
73
24
14
26
34
1.94
38100--38374
26
11.1
24
81
12
133
28
14
24
33
1.95
38037--38279
70
4.0
60
75
23
215
27
13
24
34
1.93
37999--38331
110
2.9
113
83
11
415
28
14
23
33
1.94
38189--38224
18
2.0
18
100
0
72
27
11
16
44
1.82
38207--38420
26
8.2
26
88
5
272
28
15
22
33
1.95
38525--38633
26
4.2
26
85
4
157
28
14
22
34
1.93
39721--39753
17
1.9
17
100
0
66
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39721--39755
2
18.0
2
94
5
63
51
0
0
48
1.00
40387--42560
334
6.6
330
83
6
2564
33
14
15
36
1.88

Tables:   1

The End!