Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011993.1 Corchorus capsularis cultivar CVL-1 contig12014, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11975
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:11404 original size:1 final size:1

Alignment explanation


    Indices: 11398--11439  Score: 84
    Period size: 1  Copynumber: 42.0  Consensus size: 1

      11388 ATCTTAATGG

                                                      
      11398 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

      11440 GGAACAGGTA


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   41  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Found at i:11949 original size:1 final size:1

Alignment explanation


    Indices: 11943--11975  Score: 66
    Period size: 1  Copynumber: 33.0  Consensus size: 1

      11933 TGCTTCTTAC

                                             
      11943 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   32  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.