Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011998.1 Corchorus capsularis cultivar CVL-1 contig12019, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52379

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2592--2625
14
2.3
15
90
5
52
5
26
0
67
1.13
6728--6786
25
2.5
24
88
5
84
35
20
0
44
1.52
6796--6862
26
2.6
26
87
0
98
56
8
1
32
1.39
6796--6839
15
3.2
15
72
24
51
56
6
0
36
1.26
6828--6906
33
2.4
32
71
24
76
54
10
2
32
1.47
6934--7039
33
3.2
33
81
6
126
13
34
35
16
1.87
13926--13960
16
2.2
16
100
0
70
40
11
5
42
1.65
26245--26299
27
2.0
27
100
0
110
25
21
14
38
1.92
26573--26611
5
7.6
5
85
5
51
35
0
2
61
1.10
26573--26611
16
2.5
15
87
4
51
35
0
2
61
1.10
37389--37415
2
13.5
2
100
0
54
0
0
48
51
1.00
50126--52374
973
2.3
954
83
7
2732
36
15
13
34
1.87
50126--52379
643
3.5
641
82
7
2579
36
15
13
34
1.87
50117--52379
324
7.0
324
83
6
2578
36
15
13
34
1.87

Tables:   1

The End!