Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000120.1 Corchorus capsularis cultivar CVL-1 contig00120, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 766

Length: 1277
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38


Found at i:139 original size:16 final size:16

Alignment explanation


    Indices: 86--139  Score: 56
    Period size: 16  Copynumber: 3.2  Consensus size: 16

         76 CGAGCACCGC

                             
         86 TTTG-TATAAACTTGGT
          1 TTTGTTATAAAC-TGGT

                             * 
        102 TTTGTTATTACTAACTGAT
          1 TTTGTTA-TA--AACTGGT

                            
        121 TTTGTTATAAACTGGT
          1 TTTGTTATAAACTGGT

               
        137 TTT
          1 TTT

        140 ATGAATTGTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 8
        0.76            0.05        0.19

Matches are distributed among these distances:
  16   13  0.41
  17    2  0.06
  18    4  0.12
  19   10  0.31
  20    3  0.09

ACGTcount: A:0.24, C:0.07, G:0.15, T:0.54


Consensus pattern (16 bp):   
TTTGTTATAAACTGGT
Done.