Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001200.1 Corchorus capsularis cultivar CVL-1 contig01200, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3310
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35


Found at i:1937 original size:48 final size:49

Alignment explanation


    Indices: 1866--1963  Score: 135
    Period size: 48  Copynumber: 2.0  Consensus size: 49

       1856 ACCAAAAAAG

                             *                    *          
       1866 ATTAATTAACTTTTGTTTGGGATTGCACGCATC-ATATGGATACGGGCT
          1 ATTAATTAACTTTTGTTAGGGATTGCACGCATCGATATAGATACGGGCT

                     *                 *  *                   
       1914 ATTAATTAATTTTTGTTAGGGATTGCATGCGTCGTATATAGATACGGGCT
          1 ATTAATTAACTTTTGTTAGGGATTGCACGCATCG-ATATAGATACGGGCT

       1964 CCTTTTCGTT


Statistics
Matches: 43,  Mismatches: 5, Indels: 2
        0.86            0.10        0.04

Matches are distributed among these distances:
  48   29  0.67
  50   14  0.33

ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39


Consensus pattern (49 bp):   
ATTAATTAACTTTTGTTAGGGATTGCACGCATCGATATAGATACGGGCT
Done.