Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012007.1 Corchorus capsularis cultivar CVL-1 contig12028, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8319
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32


Found at i:7909 original size:24 final size:23

Alignment explanation


    Indices: 7882--7932  Score: 57
    Period size: 23  Copynumber: 2.2  Consensus size: 23

       7872 GGGGTCAACT

                *           *       
       7882 GGGATCCCACTTCGACTCCAAACC
          1 GGGAGCCCACTT-GACCCCAAACC

                     *        *    
       7906 GGGAGCCCAGTTGACCCCCAACC
          1 GGGAGCCCACTTGACCCCAAACC

                
       7929 GGGA
          1 GGGA

       7933 CCCCGGTTAG


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  23   13  0.57
  24   10  0.43

ACGTcount: A:0.24, C:0.39, G:0.25, T:0.12


Consensus pattern (23 bp):   
GGGAGCCCACTTGACCCCAAACC
Done.