Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012008.1 Corchorus capsularis cultivar CVL-1 contig12029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60804

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1953--2088
54
2.5
54
96
1
247
26
30
19
22
1.98
1953--2109
54
2.9
54
87
0
118
26
33
18
21
1.96
2342--2418
16
5.3
14
69
25
52
53
3
2
40
1.33
2466--2508
14
3.2
13
80
9
50
65
4
2
27
1.25
2554--2619
32
2.1
32
85
5
89
13
34
37
13
1.84
2807--2846
20
2.0
20
95
0
71
27
20
5
47
1.70
14715--14745
2
15.0
2
93
6
53
48
3
0
48
1.17
15787--15872
45
1.9
44
95
2
154
24
22
20
32
1.98
26809--26844
16
2.2
16
90
9
56
22
0
16
61
1.35
27890--27939
2
23.5
2
80
11
55
46
8
2
44
1.44
28501--28654
67
2.3
66
84
7
188
34
10
16
38
1.83
28501--28718
22
9.8
22
66
14
106
33
10
17
38
1.83
28760--28880
22
5.5
22
72
14
81
38
7
18
36
1.79
28741--29818
44
25.2
43
65
20
242
39
10
16
34
1.82
28886--29157
22
12.5
22
73
13
147
41
10
14
33
1.80
29257--29818
22
26.4
21
67
16
180
39
10
16
33
1.82
29399--29869
22
22.0
22
66
17
111
38
10
16
34
1.82
29590--29678
45
2.0
45
84
4
117
32
11
17
38
1.86
33535--33560
2
13.0
2
100
0
52
50
0
0
50
1.00
42444--43002
171
3.3
170
89
1
827
25
10
31
32
1.90
50242--50276
2
17.5
2
100
0
70
48
0
0
51
1.00
53575--53600
12
2.2
12
100
0
52
34
7
19
38
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54648--54801
47
3.1
48
70
16
152
58
4
10
26
1.50
54649--54847
99
2.0
100
98
1
382
57
4
11
26
1.52
58617--58663
1
47.0
1
100
0
94
100
0
0
0
0.00
59639--59668
15
1.9
16
93
6
53
43
0
3
53
1.17

Tables:   1

The End!