Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012009.1 Corchorus capsularis cultivar CVL-1 contig12030, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85189

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1155--1209
17
3.2
17
87
10
76
23
20
18
38
1.93
2351--2540
63
3.1
63
90
2
287
10
22
37
29
1.87
12364--12494
27
5.2
27
77
15
145
25
6
35
32
1.82
12369--12456
45
2.0
45
90
0
140
25
6
34
34
1.82
13087--13166
21
3.1
28
70
26
84
43
11
12
32
1.78
18921--18958
20
1.9
20
100
0
76
42
18
0
39
1.50
20957--20990
17
2.1
16
88
5
50
29
0
2
67
1.05
21321--21395
21
3.5
21
77
3
69
33
10
13
42
1.78
27795--27824
15
2.0
15
100
0
60
20
33
13
33
1.91
34972--35028
27
2.1
27
96
0
105
26
28
29
15
1.96
35835--35886
27
1.9
27
96
0
95
36
19
13
30
1.90
36363--36421
24
2.4
23
76
15
57
55
1
1
40
1.20
37792--37827
6
6.0
6
100
0
72
16
0
50
33
1.46
42011--42110
50
2.0
50
96
3
184
32
18
14
36
1.90
43992--44018
2
13.5
2
100
0
54
51
48
0
0
1.00
53318--53371
22
2.5
22
84
0
63
37
11
11
40
1.76
53606--53668
23
3.0
21
88
9
85
41
15
3
39
1.64
53428--53731
22
14.0
22
67
14
134
36
16
9
37
1.81
53428--54615
44
27.5
43
64
18
203
36
16
9
37
1.81
53755--53846
22
4.2
22
72
8
71
41
14
7
36
1.74
53947--54022
22
3.5
22
77
15
61
35
10
9
44
1.71
54062--54113
22
2.4
22
86
0
68
36
13
11
38
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54222--54380
22
7.4
21
72
16
105
38
16
8
36
1.79
54237--54619
66
5.6
65
74
11
254
37
17
8
36
1.80
54424--54475
24
2.3
23
83
9
63
38
17
7
36
1.78
54398--54619
22
10.0
22
69
12
100
38
17
8
36
1.80
54781--54819
19
2.0
20
85
14
55
61
2
2
33
1.23
59164--59200
18
2.0
19
89
5
58
59
2
2
35
1.26
63398--63436
20
2.0
20
85
10
53
17
28
2
51
1.59
73331--73355
6
4.2
6
100
0
50
0
52
0
48
1.00
84988--85032
21
2.1
21
87
0
63
13
37
8
40
1.76

Tables:   1

The End!