Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001201.1 Corchorus capsularis cultivar CVL-1 contig01201, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10128
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31


Found at i:4713 original size:29 final size:29

Alignment explanation


    Indices: 4657--4717  Score: 86
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       4647 AGTTATTACT

                                * **     
       4657 AAACAGAGCAAGAGGTATGGTGCCAAAAA
          1 AAACAGAGCAAGAGGTATGGCGAAAAAAA

                            *            
       4686 AAACAGAGCAAGAGGTTTGGCGAAAAAAA
          1 AAACAGAGCAAGAGGTATGGCGAAAAAAA

               
       4715 AAA
          1 AAA

       4718 GAACAGAACA


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.52, C:0.11, G:0.26, T:0.10


Consensus pattern (29 bp):   
AAACAGAGCAAGAGGTATGGCGAAAAAAA
Done.