Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012011.1 Corchorus capsularis cultivar CVL-1 contig12032, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55257

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
731--776
18
2.5
20
82
13
62
13
15
0
71
1.14
1740--1793
25
2.2
25
93
6
92
27
18
22
31
1.97
11232--11271
20
2.0
20
90
9
64
35
10
20
35
1.86
12256--12285
15
2.0
15
100
0
60
33
46
6
13
1.69
12669--12699
2
15.5
2
100
0
62
51
0
0
48
1.00
17814--17857
14
3.1
14
75
12
54
22
11
6
59
1.55
18639--18681
20
2.1
21
87
12
63
46
0
9
44
1.35
23860--23911
24
2.0
26
89
10
81
42
13
7
36
1.73
33721--33766
2
22.5
2
87
12
67
47
4
0
47
1.21
34432--34464
8
4.1
8
100
0
66
48
12
0
39
1.40
34853--34898
5
9.2
5
100
0
92
58
0
0
41
0.98
40412--40451
3
13.3
3
100
0
80
32
0
32
35
1.58
42992--43063
31
2.3
31
100
0
144
34
19
16
29
1.94
53029--53090
12
5.4
10
83
12
52
70
3
0
25
1.02
53031--53083
3
18.0
3
88
7
65
67
3
0
28
1.07

Tables:   1

The End!