Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012012.1 Corchorus capsularis cultivar CVL-1 contig12033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43434

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
936--999
21
3.1
20
91
6
101
67
6
0
26
1.14
3964--4040
29
2.6
29
89
2
118
16
29
16
36
1.92
4176--4251
29
2.6
29
78
2
89
39
15
26
18
1.91
4801--5048
22
11.5
22
68
18
69
32
16
10
40
1.83
4757--4908
62
2.5
62
95
0
268
34
14
9
41
1.79
5133--5247
22
5.1
22
80
8
97
40
14
8
36
1.77
5271--5454
22
8.5
22
72
10
146
33
15
9
41
1.79
5190--5338
79
1.9
81
82
2
194
36
17
6
40
1.74
5332--5453
66
1.9
65
84
6
167
35
14
10
39
1.81
5562--5682
22
5.5
22
79
2
118
32
14
9
42
1.79
5536--5665
44
2.9
44
75
5
136
33
15
10
41
1.80
5541--5682
44
3.2
43
72
7
124
33
14
9
42
1.78
5740--5837
38
2.6
37
77
3
115
58
11
17
13
1.63
6889--6950
18
3.3
18
77
8
63
14
11
64
9
1.49
6889--6950
6
10.0
6
82
6
52
14
11
64
9
1.49
7017--7186
60
2.7
61
83
8
193
37
12
18
32
1.88
7229--7388
60
2.7
60
83
4
207
31
16
15
37
1.89
8988--9157
86
2.0
87
94
1
297
45
14
12
26
1.81
10813--11275
229
2.0
229
96
0
856
31
15
22
30
1.95
11177--11569
155
2.5
153
82
6
463
32
14
19
33
1.91
11883--11955
28
2.6
28
77
10
78
30
15
28
26
1.96
17059--17095
17
2.2
17
90
0
56
27
8
13
51
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21192--21228
18
2.1
18
90
10
58
24
27
16
32
1.96
28916--28949
2
17.5
2
93
6
61
50
0
0
50
1.00
34283--34307
1
25.0
1
100
0
50
0
0
0
100
0.00
37939--37990
24
2.1
25
92
3
88
44
17
23
15
1.86
41842--41877
3
12.0
3
100
0
72
33
0
33
33
1.58
42906--42937
6
5.3
6
100
0
64
65
0
15
18
1.27

Tables:   1

The End!