genome.fa.s12013.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012013.1 Corchorus capsularis cultivar CVL-1 contig12034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36914

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4559--4584	6	4.3	6	100	0	52	34	34	0	30	1.58
9431--9637	102	2.0	104	90	1	328	48	4	8	38	1.56
10015--10110	50	1.9	50	86	0	138	36	13	21	28	1.92
13830--13885	26	2.2	26	83	0	67	14	19	7	58	1.58
14843--14901	31	1.9	31	86	6	84	35	13	3	47	1.60
15038--15122	38	2.3	38	81	2	100	14	18	10	56	1.66
15172--15555	22	17.6	21	70	13	183	37	9	15	36	1.81
15212--15284	38	1.9	38	83	10	96	43	6	13	35	1.71
15191--15307	60	1.9	61	82	1	146	42	7	13	35	1.73
15172--15555	44	8.8	43	70	13	205	37	9	15	36	1.81
15525--15676	62	2.5	62	91	0	241	42	7	13	35	1.74
15473--15631	22	7.5	20	66	24	62	42	9	14	33	1.78
18476--18573	50	2.0	50	87	0	142	47	20	11	20	1.80
22217--22262	6	7.7	6	92	7	76	84	0	13	2	0.71
22437--22496	31	1.9	31	93	6	104	30	20	3	46	1.66
22804--22846	19	2.1	21	84	16	56	27	6	2	62	1.33
23239--23403	22	7.5	22	75	9	88	32	9	20	38	1.85
23242--23349	22	5.0	22	82	3	105	33	11	18	37	1.86
23439--23499	24	2.7	23	78	9	63	37	9	16	36	1.82
23512--23819	22	13.9	22	69	12	83	39	9	16	34	1.81
23654--24236	44	13.3	44	67	16	218	40	9	15	34	1.79
23674--23821	66	2.2	66	80	2	163	40	10	14	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23592--23821	22	10.5	22	74	8	146	41	10	14	33	1.80
23927--23974	19	2.5	19	93	3	78	45	10	18	25	1.81
23965--24506	22	24.7	22	70	11	179	38	10	14	36	1.81
23927--24506	66	8.9	63	68	16	220	39	10	14	35	1.81
26094--26118	3	8.3	3	100	0	50	32	0	0	68	0.90
31309--31339	15	2.1	15	100	0	62	38	12	6	41	1.69
32239--32277	21	1.9	20	85	15	53	61	2	5	30	1.31
33007--33121	54	2.1	54	95	0	203	36	16	13	33	1.87
33880--34000	60	2.0	60	96	0	224	36	4	19	40	1.70
35221--35262	19	2.2	19	100	0	84	30	14	23	30	1.94

Tables:   1

The End!