Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012014.1 Corchorus capsularis cultivar CVL-1 contig12035, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7916
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Found at i:2865 original size:19 final size:21

Alignment explanation


    Indices: 2819--2858  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       2809 AGGTGGCTAG

                                 
       2819 ACTCTTAATACCTAGTAAAAC
          1 ACTCTTAATACCTAGTAAAAC

                          *    
       2840 ACTCTTAATACCTATTAAA
          1 ACTCTTAATACCTAGTAAA

       2859 GCTCTTAGCC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.42, C:0.23, G:0.03, T:0.33


Consensus pattern (21 bp):   
ACTCTTAATACCTAGTAAAAC
Done.