Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012016.1 Corchorus capsularis cultivar CVL-1 contig12037, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24298

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5811--5988
57
3.0
57
79
10
223
26
16
14
42
1.86
11925--11954
4
7.5
4
100
0
60
23
0
0
76
0.78
14682--14714
10
3.3
10
91
0
57
57
0
0
42
0.98
15243--15286
22
2.0
22
86
4
61
65
4
9
20
1.38
18417--18509
11
7.1
14
65
22
58
33
2
8
55
1.42
18448--18515
26
2.6
26
86
9
102
33
1
10
54
1.43
18524--18582
25
2.4
25
88
5
86
44
0
18
37
1.50
18653--18697
21
2.1
22
83
4
56
40
8
37
13
1.76
18950--19001
2
27.0
2
80
7
63
46
1
3
48
1.31
19350--19396
22
2.1
22
84
0
58
57
8
6
27
1.53
20412--20452
12
3.5
11
86
6
55
60
2
0
36
1.10
21535--21628
22
4.3
22
76
0
80
39
14
9
36
1.79
22591--23273
22
30.9
22
68
16
213
36
14
10
38
1.82
22616--23273
44
14.9
44
68
15
252
35
15
11
38
1.82
22792--22845
21
2.5
23
80
17
62
40
11
7
40
1.69
22940--23072
68
2.0
68
83
5
171
36
15
9
39
1.79
24160--24202
20
2.2
20
87
4
70
58
20
0
20
1.40

Tables:   1

The End!