Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012017.1 Corchorus capsularis cultivar CVL-1 contig12038, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15996

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2060--2127
32
2.1
32
86
0
91
29
27
25
17
1.97
2800--2824
11
2.3
11
100
0
50
0
44
0
56
0.99
3241--3285
23
2.0
23
100
0
90
8
8
13
68
1.38
4233--4287
24
2.3
24
93
0
92
34
23
25
16
1.95
4314--4400
27
3.3
27
88
1
131
20
42
18
18
1.89
6782--6879
32
3.1
31
86
5
133
37
26
16
19
1.92
6931--7017
24
3.6
24
82
0
93
17
29
36
16
1.91
10265--10321
30
1.9
30
88
0
87
24
15
15
43
1.86
13328--13778
36
12.5
36
80
7
436
45
10
17
25
1.81
13344--13776
108
4.0
107
81
7
500
45
10
17
26
1.82
13784--14439
41
16.5
41
87
6
915
47
12
19
20
1.81
13788--14439
78
8.2
78
90
3
921
47
11
19
20
1.81
13810--14439
119
5.3
119
88
6
920
47
11
19
20
1.80
14107--14177
23
3.3
23
62
18
62
52
11
18
18
1.74
14388--14579
36
5.4
35
84
6
199
48
13
14
23
1.78
14446--14579
70
1.9
73
89
4
211
52
11
11
24
1.71
14447--14598
36
4.3
36
85
7
161
50
11
13
23
1.75
14608--14839
36
6.6
35
85
5
272
43
7
20
28
1.80
14608--14839
108
2.2
104
86
4
313
43
7
20
28
1.80
15454--15490
19
2.0
18
89
5
56
40
8
21
29
1.82

Tables:   1

The End!