Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012018.1 Corchorus capsularis cultivar CVL-1 contig12039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7789
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36


Found at i:7125 original size:47 final size:47

Alignment explanation


    Indices: 7063--7154  Score: 139
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       7053 TTTGTTTGTT

                  *   *                          *         
       7063 TATTTGGTAGTTAGATAGTTTATTTATGGTATAATTTCTAGTTTGGG
          1 TATTTGCTAGGTAGATAGTTTATTTATGGTATAATTTATAGTTTGGG

                                        *    *           
       7110 TATTTGCTAGGTAGATAGTTTATTTATGTTATAGTTTATAGTTTG
          1 TATTTGCTAGGTAGATAGTTTATTTATGGTATAATTTATAGTTTG

       7155 AATTGAATTC


Statistics
Matches: 40,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  47   40  1.00

ACGTcount: A:0.24, C:0.02, G:0.22, T:0.52


Consensus pattern (47 bp):   
TATTTGCTAGGTAGATAGTTTATTTATGGTATAATTTATAGTTTGGG
Done.