Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012021.1 Corchorus capsularis cultivar CVL-1 contig12042, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36632

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
572--706
16
8.4
16
77
6
139
10
20
37
31
1.86
583--706
32
3.9
32
88
2
169
10
20
38
30
1.86
10767--10847
33
2.5
33
87
0
108
22
9
23
44
1.82
10794--10896
33
3.1
32
86
5
118
25
8
23
42
1.82
14558--14606
21
2.3
21
85
0
62
28
28
32
10
1.90
18897--18983
14
5.7
14
71
24
61
41
6
11
40
1.68
18887--18982
49
2.0
48
89
6
149
39
7
14
38
1.74
20564--20634
36
2.0
36
86
5
99
39
15
19
25
1.91
20615--20801
38
4.9
38
84
5
252
32
19
18
29
1.96
20615--20800
76
2.4
76
92
0
309
32
19
18
29
1.96
20796--20976
43
4.3
41
75
12
145
27
25
16
31
1.96
20796--20975
84
2.1
85
81
7
215
26
25
16
31
1.96
20954--20994
18
2.3
18
95
0
73
29
21
2
46
1.64
20982--21072
41
2.2
41
82
7
114
20
19
24
35
1.96
26143--26238
48
2.0
48
95
0
174
35
9
26
29
1.87
27392--27436
21
2.1
21
83
0
54
15
37
6
40
1.74
27631--27723
11
7.1
14
65
22
58
33
2
8
55
1.42
27662--27729
26
2.6
26
86
9
102
33
1
10
54
1.43
27738--27797
25
2.5
25
86
5
79
43
0
20
36
1.52
30040--30104
32
2.0
32
96
0
121
38
10
9
41
1.72
30934--30958
3
8.3
3
100
0
50
0
32
0
68
0.90
30957--30982
1
26.0
1
100
0
52
0
0
0
100
0.00

Tables:   1

The End!