Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012022.1 Corchorus capsularis cultivar CVL-1 contig12043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34127

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
334--371
20
1.9
20
94
0
67
21
5
50
23
1.69
782--827
19
2.5
19
89
3
67
36
30
19
13
1.90
3502--3669
84
2.0
84
96
0
309
44
7
14
33
1.72
6562--6648
30
2.9
31
75
10
81
19
16
25
39
1.92
6606--6736
57
2.4
54
82
11
144
19
16
27
37
1.92
14835--14894
30
2.0
30
100
0
120
30
16
30
23
1.96
19196--19282
30
2.9
31
75
10
81
19
16
25
39
1.92
19294--19427
26
4.7
26
72
27
96
19
14
26
38
1.91
19186--19429
58
4.3
55
78
13
248
20
13
27
38
1.90
20785--20942
54
2.9
52
84
8
192
41
22
11
24
1.86
20911--20950
21
1.9
21
89
0
62
47
22
5
25
1.71
21861--21901
13
3.2
13
83
12
50
43
0
0
56
0.99
22332--22367
17
2.1
17
100
0
72
44
30
5
19
1.73
30009--30068
27
2.3
26
82
5
75
31
11
10
46
1.73
33200--33300
25
3.7
25
80
19
130
19
28
26
24
1.99
33374--33444
32
2.2
31
80
11
81
23
18
28
29
1.98

Tables:   1

The End!