Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012026.1 Corchorus capsularis cultivar CVL-1 contig12047, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57879

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1741--1805
10
6.5
10
73
7
60
32
1
0
66
1.01
1759--1805
21
2.3
21
88
3
69
36
2
0
61
1.08
1742--1807
9
6.8
9
72
14
51
34
1
0
63
1.04
1801--1869
31
2.3
30
84
2
93
36
13
17
33
1.88
3254--3317
31
2.1
31
100
0
128
31
12
9
46
1.73
4348--4413
25
2.6
26
73
9
64
69
1
25
3
1.11
4560--4596
18
2.1
18
100
0
74
48
10
27
13
1.75
7100--7159
27
2.1
28
90
6
95
30
8
6
55
1.55
7711--7741
4
7.8
4
92
0
53
22
0
54
22
1.44
8147--8345
100
2.0
101
81
5
233
38
15
13
33
1.85
19218--19941
156
4.6
156
78
5
730
30
14
20
34
1.92
20395--20469
31
2.4
32
84
2
89
38
37
14
9
1.79
20395--20469
16
4.8
16
75
3
80
38
37
14
9
1.79
21748--21779
16
2.0
16
93
0
55
46
37
15
0
1.46
21832--21869
15
2.4
17
87
12
55
36
39
15
7
1.77
22021--22092
28
2.6
28
80
8
92
36
16
25
22
1.94
26147--26199
21
2.5
21
85
11
65
37
16
22
22
1.94
30308--30816
178
2.9
177
86
2
689
35
15
13
34
1.87
31994--32026
2
16.5
2
100
0
66
51
0
0
48
1.00
32484--32508
2
12.5
2
100
0
50
48
0
0
52
1.00
34682--34726
2
22.5
2
86
8
65
46
2
2
48
1.26
43411--43457
22
2.1
23
88
4
69
57
8
2
31
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43422--43471
22
2.3
22
82
6
57
60
6
2
32
1.32
43435--43473
15
2.6
15
83
0
51
56
5
2
35
1.35
43711--43754
21
2.1
21
91
0
70
31
9
40
18
1.81
44845--44919
38
1.9
39
84
7
100
24
12
8
56
1.62
49588--49627
15
2.6
16
92
8
73
80
15
5
0
0.88
57317--57390
37
2.0
37
83
0
94
24
16
31
28
1.96
57707--57761
20
2.9
19
75
17
60
47
0
1
50
1.11

Tables:   1

The End!