Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012027.1 Corchorus capsularis cultivar CVL-1 contig12048, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25256

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1335--1395
30
2.0
30
93
0
104
16
1
18
63
1.38
1372--1400
15
1.9
15
100
0
58
24
0
6
68
1.13
6616--6650
2
17.5
2
100
0
70
48
0
0
51
1.00
10917--10946
14
2.2
14
94
5
53
0
13
0
86
0.57
13116--13236
60
2.0
60
95
0
215
23
19
12
44
1.84
13140--13266
60
2.1
59
81
8
141
25
17
14
42
1.87
14368--14446
38
2.1
38
100
0
158
29
24
10
36
1.88
16997--17060
30
2.1
30
85
8
85
20
34
17
28
1.95
17671--17715
23
1.9
24
90
4
74
26
0
0
73
0.84
22037--22088
21
2.6
20
81
6
61
53
19
3
23
1.61
22999--23028
15
2.0
15
100
0
60
13
40
0
46
1.43
23102--23131
15
2.0
15
93
0
51
26
3
46
23
1.68
23905--23942
18
2.1
18
100
0
76
44
39
0
15
1.47

Tables:   1

The End!