Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012033.1 Corchorus capsularis cultivar CVL-1 contig12054, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54712

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2472--2519
24
2.0
24
84
4
62
47
2
4
45
1.33
3578--3621
22
2.0
22
83
12
56
63
2
25
9
1.35
5164--5206
16
2.4
18
81
11
54
79
16
2
2
0.95
5164--5209
17
2.8
16
86
3
56
80
15
2
2
0.91
8152--8211
19
3.2
19
85
0
93
43
26
5
25
1.75
9606--9870
107
2.5
108
91
4
414
41
9
8
40
1.67
12945--12989
18
2.6
18
77
19
51
11
44
13
31
1.78
13449--13475
14
1.9
14
100
0
54
22
25
0
51
1.48
20535--20579
13
3.5
13
90
3
74
22
13
8
55
1.65
20902--20953
22
2.4
21
71
9
50
48
5
11
34
1.63
27684--27726
13
3.4
13
90
3
70
20
13
9
55
1.66
27725--27756
6
5.3
6
100
0
64
31
0
15
53
1.43
30196--30225
6
5.0
6
100
0
60
16
0
16
66
1.25
35503--35538
19
1.9
18
88
5
54
33
22
2
41
1.68
37162--37192
1
31.0
1
100
0
62
100
0
0
0
0.00
39642--39684
21
2.0
21
86
0
59
11
30
9
48
1.71
47250--47285
4
9.0
4
93
0
63
27
22
0
50
1.50
47416--47453
18
2.1
18
95
0
67
52
13
0
34
1.40
47492--47533
17
2.7
15
86
13
66
47
9
9
33
1.68
49654--49692
20
2.0
20
90
10
62
38
7
5
48
1.54
50355--50379
2
12.5
2
100
0
50
48
0
0
52
1.00
52820--53019
108
2.0
99
83
13
248
31
9
13
46
1.74

Tables:   1

The End!