Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012035.1 Corchorus capsularis cultivar CVL-1 contig12056, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6980
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37


Found at i:4405 original size:16 final size:15

Alignment explanation


    Indices: 4384--4430  Score: 58
    Period size: 16  Copynumber: 3.0  Consensus size: 15

       4374 TTGGGCGGGT

                            
       4384 TCGGGTTCGGGTTCTG
          1 TCGGGTTCGGGTT-TG

                   *       *
       4400 TCGGGTTTGGGTATTT
          1 TCGGGTTCGGGT-TTG

                           
       4416 TCGGGTTCGGGTTTG
          1 TCGGGTTCGGGTTTG

       4431 GGTTGAGTTC


Statistics
Matches: 26,  Mismatches: 4, Indels: 3
        0.79            0.12        0.09

Matches are distributed among these distances:
  15    2  0.08
  16   23  0.88
  17    1  0.04

ACGTcount: A:0.02, C:0.13, G:0.43, T:0.43


Consensus pattern (15 bp):   
TCGGGTTCGGGTTTG

Found at i:5820 original size:22 final size:22

Alignment explanation


    Indices: 5795--5838  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       5785 AAAAATCAGA

                                   
       5795 TTTCT-TTTTTCAGTTGATCATT
          1 TTTCTCTTTTT-AGTTGATCATT

                                  
       5817 TTTCTCTTTTTAGTTGATCATT
          1 TTTCTCTTTTTAGTTGATCATT

       5839 ATCCACCCCC


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  22   16  0.76
  23    5  0.24

ACGTcount: A:0.14, C:0.14, G:0.09, T:0.64


Consensus pattern (22 bp):   
TTTCTCTTTTTAGTTGATCATT
Done.